cis; GTCTATA

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GTCTATA

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GTCTATA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.62At1g68840DNA-binding protein RAV2 (RAV2) / AP2 domain-containing protein RAP2.8 ((RAV2)) ABI3VP1
0.55At5g49450bZIP family transcription factor bZIP
0.54At1g25560AP2 domain-containing transcription factor, putative ABI3VP1
0.51At2g38470WRKY family transcription factor ((WRKY33)) WRKY
0.51At5g67300myb family transcription factor MYB
0.51At5g07100WRKY family transcription factor ((WRKY26)) WRKY
0.50At1g08320bZIP family transcription factor bZIP
0.50At1g21450scarecrow-like transcription factor 1 (SCL1) ((SCL1)) GRAS
-0.49At1g14410DNA-binding protein-related WHIRLY
0.49At3g29035no apical meristem (NAM) family protein NAC
0.49At4g17500ethylene-responsive element-binding protein 1 (ERF1) / EREBP-2 protein ((ATERF-1)) AP2-EREBP
0.49At4g01250WRKY family transcription factor ((WRKY22)) WRKY
0.48At1g08930early-responsive to dehydration stress protein (ERD6) / sugar transporter family protein ((ERD6)) C2H2
0.48At4g31550WRKY family transcription factor ((WRKY11)) WRKY
0.48At1g13260DNA-binding protein RAV1 (RAV1) ((RAV1)) ABI3VP1

link to other 304 cis elements in ATTED

similar seq.
←GTCTATA→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TATAGAC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GTCTATA1.000.072
TCTATAT0.880.111
TCTATAA0.870.074
CTATATA0.830.144
TATATAT0.830.1026
ATAAATA0.820.0917
TCCTATA0.820.0655
TATAAAT0.820.1018
ATATATA0.800.1026
TATATAA0.800.111