ATTED-II : GeneID search result

[←][→] ath At1g16910 Gene

functional annotation

Function

LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)

GO BP

GO:0009299 [list] [network] mRNA transcription	(13 genes)	ISS
GO:0090698 [list] [network] post-embryonic plant morphogenesis	(221 genes)	ISS
GO:0048367 [list] [network] shoot system development	(1318 genes)	IEA

GO CC

GO:0005739 [list] [network] mitochondrion	(4228 genes)	ISM
GO:0005634 [list] [network] nucleus	(10305 genes)	ISS

GO MF

KEGG

Protein

NP_173135.1

BLAST

NP_173135.1

Orthologous

[Ortholog page] LSH3 (ath) LSH10 (ath) LSH2 (ath) LSH4 (ath) LSH1 (ath) LSH6 (ath) LSH7 (ath) LOC4328416 (osa) LOC4330024 (osa) LOC4331099 (osa) LOC4336401 (osa) LOC4338491 (osa) LOC4341811 (osa) LOC7454352 (ppo) LOC7455905 (ppo) LOC7455945 (ppo) LOC7458006 (ppo) LOC7458242 (ppo) LOC7460096 (ppo) LOC7467540 (ppo) LOC7470206 (ppo) LOC7471962 (ppo) LOC7474992 (ppo) LOC7480386 (ppo) LOC7487181 (ppo) LOC7487704 (ppo) LOC7489106 (ppo) LOC7496798 (ppo) LOC9266624 (osa) LOC11407427 (mtr) LOC11408401 (mtr) LOC11408456 (mtr) LOC11409774 (mtr) LOC11410018 (mtr) LOC11410358 (mtr) LOC11419093 (mtr) LOC11434608 (mtr) LOC18095487 (ppo) LOC18102467 (ppo) LOC25484251 (mtr) LOC25485780 (mtr) LOC25485963 (mtr) LOC25493337 (mtr) LOC25499270 (mtr) LOC25499718 (mtr) LSH9 (ath) LSH5 (ath) LOC100306082 (gma) LOC100306225 (gma) LOC100527164 (gma) LOC100527409 (gma) LOC100527554 (gma) LOC100775798 (gma) LOC100775838 (gma) LOC100778283 (gma) LOC100778886 (gma) LOC100780494 (gma) LOC100786135 (gma) LOC100789834 (gma) LOC100791424 (gma) LOC100802715 (gma) LOC100802937 (gma) LOC100803605 (gma) LOC100803965 (gma) LOC100806134 (gma) LOC100806493 (gma) LOC100806497 (gma) LOC100810350 (gma) LOC100810655 (gma) LOC100815968 (gma) TFAM1 (sly) LOC101244207 (sly) LOC101246185 (sly) LOC101247206 (sly) TFAM2 (sly) LOC101252299 (sly) LOC101253723 (sly) LOC101256738 (sly) LOC101260873 (sly) LOC101261831 (sly) LOC101262247 (sly) LOC101263979 (sly) LOC102663941 (gma) LOC103828755 (bra) LOC103832357 (bra) LOC103837296 (bra) LOC103843480 (bra) LOC103843985 (bra) LOC103845278 (bra) LOC103845279 (bra) LOC103848911 (bra) LOC103850046 (bra) LOC103851635 (bra) LOC103853147 (bra) LOC103853659 (bra) LOC103854635 (bra) LOC103858024 (bra) LOC103859037 (bra) LOC103861005 (bra) LOC103865110 (bra) LOC103865960 (bra) LOC103866652 (bra) LOC103867894 (bra) LOC103867981 (bra) LOC103874577 (bra) LOC107276238 (osa) LOC107278201 (osa) LOC107278610 (osa) LOC117125638 (bra) LOC123041251 (tae) LOC123045668 (tae) LOC123046119 (tae) LOC123049257 (tae) LOC123052627 (tae) LOC123053999 (tae) LOC123058740 (tae) LOC123074939 (tae) LOC123127737 (tae) LOC123128934 (tae) LOC123136756 (tae) LOC123137510 (tae) LOC123144860 (tae) LOC123146052 (tae) LOC123149104 (tae) LOC123159994 (tae) LOC123166451 (tae) LOC123181080 (tae) LOC123181711 (tae) LOC123185303 (tae) LOC123189888 (tae) LOC123402509 (hvu) LOC123403258 (hvu) LOC123409615 (hvu) LOC123411667 (hvu) LOC123412451 (hvu) LOC123427243 (hvu) LOC123430078 (hvu) LOC123440575 (hvu) LOC123444893 (hvu)

Subcellular
localization
wolf

nucl 7, plas 1, golg_plas 1, cyto 1, extr 1

(predict for NP_173135.1)

Subcellular
localization
TargetP

other 8

(predict for NP_173135.1)

Gene coexpression

Network^*for
coexpressed
genes

Coexpressed
gene list

[Coexpressed gene list for LSH8]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

256105_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

256105_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

256105_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	838262
Refseq ID (protein)	NP_173135.1

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