[←][→] ath   AT5G28490 Gene
functional annotation
Function   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)  
GO BP
GO:0010218 [list] [network] response to far red light  (54 genes)  IGI  
GO:0010114 [list] [network] response to red light  (74 genes)  IGI  
GO:0009637 [list] [network] response to blue light  (98 genes)  IGI  
GO:0009826 [list] [network] unidimensional cell growth  (279 genes)  IMP  
GO:0009416 [list] [network] response to light stimulus  (700 genes)  IBA IMP  
GO:0007275 [list] [network] multicellular organism development  (2714 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA ISM  
GO MF
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
KEGG
Protein NP_198201.1 
BLAST NP_198201.1 
Orthologous [Ortholog page] LSH3 (ath)  LSH10 (ath)  LSH2 (ath)  LSH4 (ath)  LSH6 (ath)  LSH8 (ath)  LSH7 (ath)  LOC4330024 (osa)  LOC4331099 (osa)  LOC4336401 (osa)  LOC4338491 (osa)  LOC7454352 (ppo)  LOC7455945 (ppo)  LOC7467540 (ppo)  LOC7471962 (ppo)  LOC7474992 (ppo)  LOC7487181 (ppo)  LOC7487704 (ppo)  LOC7489106 (ppo)  LOC9266624 (osa)  LOC11407427 (mtr)  LOC11408401 (mtr)  LOC11408456 (mtr)  LOC11409774 (mtr)  LOC11410018 (mtr)  LOC11410358 (mtr)  LOC11419093 (mtr)  LOC11434608 (mtr)  LOC25484251 (mtr)  LOC25485780 (mtr)  LOC25485963 (mtr)  LOC25499270 (mtr)  LOC25499718 (mtr)  LSH5 (ath)  LOC100192901 (zma)  LOC100217086 (zma)  LOC100244642 (vvi)  LOC100249172 (vvi)  LOC100254926 (vvi)  LOC100257253 (vvi)  LOC100260366 (vvi)  LOC100265705 (vvi)  LOC100266079 (vvi)  LOC100274783 (zma)  LOC100275232 (zma)  LOC100276429 (zma)  LOC100278049 (zma)  LOC100278742 (zma)  LOC100304411 (zma)  LOC100306082 (gma)  LOC100306225 (gma)  LOC100527164 (gma)  LOC100527409 (gma)  LOC100527554 (gma)  LOC100778283 (gma)  LOC100778886 (gma)  LOC100780494 (gma)  LOC100786135 (gma)  LOC100789834 (gma)  LOC100791424 (gma)  LOC100802715 (gma)  LOC100802937 (gma)  LOC100803605 (gma)  LOC100803965 (gma)  LOC100806134 (gma)  LOC100806493 (gma)  LOC100806497 (gma)  LOC100810655 (gma)  LOC100815968 (gma)  TFAM1 (sly)  LOC101246185 (sly)  LOC101247206 (sly)  TFAM2 (sly)  LOC101252299 (sly)  LOC101253723 (sly)  LOC101256738 (sly)  LOC101260873 (sly)  LOC101261831 (sly)  LOC101262247 (sly)  LOC101263979 (sly)  LOC102663941 (gma)  LOC103636537 (zma)  LOC103651051 (zma)  LOC103828755 (bra)  LOC103832357 (bra)  LOC103833736 (bra)  LOC103837296 (bra)  LOC103843480 (bra)  LOC103843985 (bra)  LOC103845277 (bra)  LOC103848911 (bra)  LOC103851635 (bra)  LOC103853147 (bra)  LOC103854635 (bra)  LOC103858024 (bra)  LOC103859037 (bra)  LOC103865110 (bra)  LOC103865960 (bra)  LOC103866652 (bra)  LOC103867894 (bra)  LOC103867981 (bra)  LOC103874577 (bra)  LOC104879291 (vvi)  LOC107276238 (osa)  LOC107278610 (osa) 
Subcellular
localization
wolf
nucl 5,  chlo 2,  mito 2,  chlo_mito 2  (predict for NP_198201.1)
Subcellular
localization
TargetP
chlo 8,  other 4  (predict for NP_198201.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 2
Genes directly connected with LSH1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.5 LSH4 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [detail] 821908
7.7 LSH10 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [detail] 818861
6.8 AT5G58390 Peroxidase superfamily protein [detail] 835952
5.2 RPL POX (plant homeobox) family protein [detail] 831745
4.5 MES17 methyl esterase 17 [detail] 820257
4.3 AGL24 AGAMOUS-like 24 [detail] 828556
4.0 AT5G65170 VQ motif-containing protein [detail] 836641
3.7 FLS2 flavonol synthase 2 [detail] 836477
Coexpressed
gene list		 [Coexpressed gene list for LSH1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246137_at
246137_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246137_at
246137_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246137_at
246137_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832941      
Refseq ID (protein) NP_198201.1 


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