[←][→] ath   AT3G23290 Gene
functional annotation
Function   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)  
GO BP
GO:0090698 [list] [network] post-embryonic plant morphogenesis  (191 genes)  IMP  
GO:0009416 [list] [network] response to light stimulus  (700 genes)  IBA  
GO:0007275 [list] [network] multicellular organism development  (2714 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (4405 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA  
GO MF
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
KEGG
Protein NP_001078202.2 
BLAST NP_001078202.2 
Orthologous [Ortholog page] LSH3 (ath)  LSH10 (ath)  LSH2 (ath)  LSH1 (ath)  LSH6 (ath)  LSH8 (ath)  LSH7 (ath)  LOC4330024 (osa)  LOC4331099 (osa)  LOC4336401 (osa)  LOC4338491 (osa)  LOC7454352 (ppo)  LOC7455945 (ppo)  LOC7467540 (ppo)  LOC7471962 (ppo)  LOC7474992 (ppo)  LOC7487181 (ppo)  LOC7487704 (ppo)  LOC7489106 (ppo)  LOC9266624 (osa)  LOC11407427 (mtr)  LOC11408401 (mtr)  LOC11408456 (mtr)  LOC11409774 (mtr)  LOC11410018 (mtr)  LOC11410358 (mtr)  LOC11419093 (mtr)  LOC11434608 (mtr)  LOC25484251 (mtr)  LOC25485780 (mtr)  LOC25485963 (mtr)  LOC25499270 (mtr)  LOC25499718 (mtr)  LSH5 (ath)  LOC100192901 (zma)  LOC100217086 (zma)  LOC100244642 (vvi)  LOC100249172 (vvi)  LOC100254926 (vvi)  LOC100257253 (vvi)  LOC100260366 (vvi)  LOC100265705 (vvi)  LOC100266079 (vvi)  LOC100274783 (zma)  LOC100275232 (zma)  LOC100276429 (zma)  LOC100278049 (zma)  LOC100278742 (zma)  LOC100304411 (zma)  LOC100306082 (gma)  LOC100306225 (gma)  LOC100527164 (gma)  LOC100527409 (gma)  LOC100527554 (gma)  LOC100778283 (gma)  LOC100778886 (gma)  LOC100780494 (gma)  LOC100786135 (gma)  LOC100789834 (gma)  LOC100791424 (gma)  LOC100802715 (gma)  LOC100802937 (gma)  LOC100803605 (gma)  LOC100803965 (gma)  LOC100806134 (gma)  LOC100806493 (gma)  LOC100806497 (gma)  LOC100810655 (gma)  LOC100815968 (gma)  TFAM1 (sly)  LOC101246185 (sly)  LOC101247206 (sly)  TFAM2 (sly)  LOC101252299 (sly)  LOC101253723 (sly)  LOC101256738 (sly)  LOC101260873 (sly)  LOC101261831 (sly)  LOC101262247 (sly)  LOC101263979 (sly)  LOC102663941 (gma)  LOC103636537 (zma)  LOC103651051 (zma)  LOC103828755 (bra)  LOC103832357 (bra)  LOC103833736 (bra)  LOC103837296 (bra)  LOC103843480 (bra)  LOC103843985 (bra)  LOC103845277 (bra)  LOC103848911 (bra)  LOC103851635 (bra)  LOC103853147 (bra)  LOC103854635 (bra)  LOC103858024 (bra)  LOC103859037 (bra)  LOC103865110 (bra)  LOC103865960 (bra)  LOC103866652 (bra)  LOC103867894 (bra)  LOC103867981 (bra)  LOC103874577 (bra)  LOC104879291 (vvi)  LOC107276238 (osa)  LOC107278610 (osa) 
Subcellular
localization
wolf
chlo 7,  nucl 2  (predict for NP_001078202.2)
Subcellular
localization
TargetP
chlo 6,  other 5  (predict for NP_001078202.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 2
Genes directly connected with LSH4 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.4 LSH10 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [detail] 818861
8.7 LSH3 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [detail] 817672
8.5 LSH1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [detail] 832941
7.7 AT5G58390 Peroxidase superfamily protein [detail] 835952
5.4 AT4G37810 EPIDERMAL PATTERNING FACTOR-like protein [detail] 829937
5.2 AT4G30250 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 829148
5.1 AT3G02500 mental retardation GTPase activating protein [detail] 821065
5.1 RPL POX (plant homeobox) family protein [detail] 831745
5.1 BLH8 BEL1-like homeodomain 8 [detail] 817343
5.0 LBD25 LOB domain-containing protein 25 [detail] 822387
4.8 AS2 Lateral organ boundaries (LOB) domain family protein [detail] 842873
4.4 AT4G31620 Transcriptional factor B3 family protein [detail] 829290
3.9 AT3G48770 ATP/DNA binding protein [detail] 824038
Coexpressed
gene list		 [Coexpressed gene list for LSH4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258288_at
258288_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258288_at
258288_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258288_at
258288_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 821908      
Refseq ID (protein) NP_001078202.2 


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