[←][→] ath   At2g31160 Gene
functional annotation
Function   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0048834 [list] [network] specification of petal number  (2 genes)  IMP  
GO:0010199 [list] [network] organ boundary specification between lateral organs and the meristem  (9 genes)  IMP  
GO:0009299 [list] [network] mRNA transcription  (13 genes)  ISS  
GO:0010492 [list] [network] maintenance of shoot apical meristem identity  (19 genes)  IMP  
GO:0048441 [list] [network] petal development  (22 genes)  IMP  
GO:0090698 [list] [network] post-embryonic plant morphogenesis  (221 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM TAS  
GO MF
KEGG
Protein NP_565716.1 
BLAST NP_565716.1 
Orthologous [Ortholog page] LSH10 (ath)  LSH2 (ath)  LSH4 (ath)  LSH1 (ath)  LSH6 (ath)  LSH8 (ath)  LSH7 (ath)  LOC4328416 (osa)  LOC4330024 (osa)  LOC4331099 (osa)  LOC4336401 (osa)  LOC4338491 (osa)  LOC4341811 (osa)  LOC7454352 (ppo)  LOC7455905 (ppo)  LOC7455945 (ppo)  LOC7458006 (ppo)  LOC7458242 (ppo)  LOC7460096 (ppo)  LOC7467540 (ppo)  LOC7470206 (ppo)  LOC7471962 (ppo)  LOC7474992 (ppo)  LOC7480386 (ppo)  LOC7487181 (ppo)  LOC7487704 (ppo)  LOC7489106 (ppo)  LOC7496798 (ppo)  LOC9266624 (osa)  LOC11407427 (mtr)  LOC11408401 (mtr)  LOC11408456 (mtr)  LOC11409774 (mtr)  LOC11410018 (mtr)  LOC11410358 (mtr)  LOC11419093 (mtr)  LOC11434608 (mtr)  LOC18095487 (ppo)  LOC18102467 (ppo)  LOC25484251 (mtr)  LOC25485780 (mtr)  LOC25485963 (mtr)  LOC25493337 (mtr)  LOC25499270 (mtr)  LOC25499718 (mtr)  LSH9 (ath)  LSH5 (ath)  LOC100306082 (gma)  LOC100306225 (gma)  LOC100527164 (gma)  LOC100527409 (gma)  LOC100527554 (gma)  LOC100775798 (gma)  LOC100775838 (gma)  LOC100778283 (gma)  LOC100778886 (gma)  LOC100780494 (gma)  LOC100786135 (gma)  LOC100789834 (gma)  LOC100791424 (gma)  LOC100802715 (gma)  LOC100802937 (gma)  LOC100803605 (gma)  LOC100803965 (gma)  LOC100806134 (gma)  LOC100806493 (gma)  LOC100806497 (gma)  LOC100810350 (gma)  LOC100810655 (gma)  LOC100815968 (gma)  TFAM1 (sly)  LOC101244207 (sly)  LOC101246185 (sly)  LOC101247206 (sly)  TFAM2 (sly)  LOC101252299 (sly)  LOC101253723 (sly)  LOC101256738 (sly)  LOC101260873 (sly)  LOC101261831 (sly)  LOC101262247 (sly)  LOC101263979 (sly)  LOC102663941 (gma)  LOC103828755 (bra)  LOC103832357 (bra)  LOC103837296 (bra)  LOC103843480 (bra)  LOC103843985 (bra)  LOC103845278 (bra)  LOC103845279 (bra)  LOC103848911 (bra)  LOC103850046 (bra)  LOC103851635 (bra)  LOC103853147 (bra)  LOC103853659 (bra)  LOC103854635 (bra)  LOC103858024 (bra)  LOC103859037 (bra)  LOC103861005 (bra)  LOC103865110 (bra)  LOC103865960 (bra)  LOC103866652 (bra)  LOC103867894 (bra)  LOC103867981 (bra)  LOC103874577 (bra)  LOC107276238 (osa)  LOC107278201 (osa)  LOC107278610 (osa)  LOC117125638 (bra)  LOC123041251 (tae)  LOC123045668 (tae)  LOC123046119 (tae)  LOC123049257 (tae)  LOC123052627 (tae)  LOC123053999 (tae)  LOC123058740 (tae)  LOC123074939 (tae)  LOC123127737 (tae)  LOC123128934 (tae)  LOC123136756 (tae)  LOC123137510 (tae)  LOC123144860 (tae)  LOC123146052 (tae)  LOC123149104 (tae)  LOC123159994 (tae)  LOC123166451 (tae)  LOC123181080 (tae)  LOC123181711 (tae)  LOC123185303 (tae)  LOC123189888 (tae)  LOC123402509 (hvu)  LOC123403258 (hvu)  LOC123409615 (hvu)  LOC123411667 (hvu)  LOC123412451 (hvu)  LOC123427243 (hvu)  LOC123430078 (hvu)  LOC123440575 (hvu)  LOC123444893 (hvu) 
Subcellular
localization
wolf
nucl 10  (predict for NP_565716.1)
Subcellular
localization
TargetP
chlo 5,  other 4  (predict for NP_565716.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with LSH3 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.9 LSH4 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [detail] 821908
6.2 BOP2 Ankyrin repeat family protein / BTB/POZ domain-containing protein [detail] 818735
6.0 LSH10 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [detail] 818861
4.9 OFP7 ovate family protein 7 [detail] 816365
4.7 AT4G37810 EPIDERMAL PATTERNING FACTOR-like protein [detail] 829937
4.2 LSH5 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [detail] 28721277
Coexpressed
gene list		 [Coexpressed gene list for LSH3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
266479_at
266479_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
266479_at
266479_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
266479_at
266479_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 817672      
Refseq ID (protein) NP_565716.1 


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