GO:0016071 mRNA metabolic process

268 ath genes in this database.
536 gma genes in this database.
310 sly genes in this database.
299 osa genes in this database.
390 zma genes in this database.
498 bra genes in this database.
275 vvi genes in this database.
399 ppo genes in this database.
330 mtr genes in this database.
911 tae genes in this database.
366 hvu genes in this database.
769 ghi genes in this database.
1033 bna genes in this database.
205 cre genes in this database.
317 sbi genes in this database.
317 sot genes in this database.
280 cit genes in this database.
322 bdi genes in this database.
594 nta genes in this database.

[QuickGO]

term: mRNA metabolic process
goid: GO:0016071

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Shaded genes do not have GeneChip data. The output was limited up to 10000.
Species Symbol Gene
coexpression		 Locus
page 		Full name* Entrez Gene ID Evidence*
sly LOC544252 WD-40 repeat protein 544252
sly LOC778316 U1 small nuclear ribonucleoprotein C-like 778316
sly cdc5 CDC5-like protein 100134885
sly LOC101243673 zinc finger CCCH domain-containing protein 64 101243673
sly LOC101243715 organelle RRM domain-containing protein 2, mitochondrial 101243715
sly LOC101243721 uncharacterized LOC101243721 101243721
sly LOC101243754 polypyrimidine tract-binding protein homolog 3-like 101243754
sly LOC101243803 U4/U6 small nuclear ribonucleoprotein Prp31 homolog 101243803
sly LOC101243815 mRNA-decapping enzyme-like protein 101243815
sly LOC101243875 G patch domain-containing protein TGH 101243875
sly LOC101243936 protein RRP6-like 2 101243936
sly TFAM1 TMF family protein 101243953
sly LOC101244110 nuclear intron maturase 4, mitochondrial 101244110
sly LOC101244207 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 101244207
sly LOC101244224 uncharacterized LOC101244224 101244224
sly LOC101244332 nonsense-mediated mRNA decay factor SMG7-like 101244332
sly LOC101244419 zinc finger matrin-type protein 2 101244419
sly LOC101244595 thioredoxin-like superfamily protein 101244595
sly LOC101244611 U1 small nuclear ribonucleoprotein A 101244611
sly LOC101244678 DExH-box ATP-dependent RNA helicase DExH12-like 101244678
sly LOC101244799 uncharacterized LOC101244799 101244799
sly LOC101244858 uncharacterized protein At4g14342-like 101244858
sly LOC101244963 uncharacterized LOC101244963 101244963
sly LOC101244976 uncharacterized LOC101244976 101244976
sly LOC101245423 DEAD-box ATP-dependent RNA helicase 21-like 101245423
sly LOC101245436 polypyrimidine tract-binding protein homolog 3 101245436
sly LOC101245441 uncharacterized LOC101245441 101245441
sly LOC101245552 uncharacterized LOC101245552 101245552
sly LOC101245652 probable small nuclear ribonucleoprotein G 101245652
sly LOC101245783 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 101245783
sly LOC101245837 uncharacterized LOC101245837 101245837
sly LOC101245917 splicing factor U2af small subunit B 101245917
sly LOC101245924 uncharacterized LOC101245924 101245924
sly LOC101245968 uncharacterized LOC101245968 101245968
sly LOC101245976 uncharacterized LOC101245976 101245976
sly LOC101246008 SART-1 family protein DOT2 101246008
sly LOC101246016 coilin-like 101246016
sly LOC101246043 probable splicing factor 3A subunit 1 101246043
sly LOC101246113 nuclear intron maturase 3, mitochondrial 101246113
sly LOC101246185 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like 101246185
sly LOC101246211 pentatricopeptide repeat-containing protein 101246211
sly LOC101246377 uncharacterized LOC101246377 101246377
sly LOC101246581 protein PELOTA 1-like 101246581
sly LOC101246632 uncharacterized LOC101246632 101246632
sly LOC101246663 uncharacterized LOC101246663 101246663
sly LOC101246716 coilin 101246716
sly LOC101246778 organelle RRM domain-containing protein 1, chloroplastic 101246778
sly LOC101246845 YTH domain-containing protein ECT3-like 101246845
sly LOC101246924 DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 101246924
sly LOC101246991 serine/arginine-rich splicing factor RS31 101246991
sly LOC101247006 ribonuclease TUDOR 1 101247006
sly LOC101247022 uncharacterized LOC101247022 101247022
sly LOC101247074 zinc finger protein ZOP1 101247074
sly LOC101247104 PHD finger-like domain-containing protein 5A 101247104
sly LOC101247106 nonsense-mediated mRNA decay factor SMG7-like 101247106
sly LOC101247143 uncharacterized LOC101247143 101247143
sly LOC101247291 putative pentatricopeptide repeat-containing protein At3g47840 101247291
sly LOC101247307 ribonuclease TUDOR 1 101247307
sly LOC101247333 uncharacterized LOC101247333 101247333
sly LOC101247414 protein MLN51 homolog 101247414
sly LOC101247445 uncharacterized LOC101247445 101247445
sly LOC101247553 pre-mRNA-processing factor 39-1 101247553
sly LOC101247742 mRNA-decapping enzyme-like protein 101247742
sly LOC101247760 U11/U12 small nuclear ribonucleoprotein 65 kDa protein 101247760
sly LOC101247792 small nuclear ribonucleoprotein SmD3b 101247792
sly LOC101247946 uncharacterized protein At4g14342 101247946
sly LOC101248051 uncharacterized LOC101248051 101248051
sly LOC101248120 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like 101248120
sly LOC101248183 cleavage stimulating factor 64 101248183
sly LOC101248611 small nuclear ribonucleoprotein SmD1b 101248611
sly LOC101248804 serine/arginine-rich splicing factor RSZ22A 101248804
sly LOC101249122 nuclear cap-binding protein subunit 1 101249122
sly LOC101249376 U2 small nuclear ribonucleoprotein B'' 101249376
sly LOC101249399 uncharacterized LOC101249399 101249399
sly LOC101249496 SART-1 family protein DOT2 101249496
sly LOC101249588 uncharacterized LOC101249588 101249588
sly LOC101249682 enhancer of mRNA-decapping protein 4-like 101249682
sly LOC101249715 protein SICKLE 101249715
sly LOC101249869 cleavage stimulation factor subunit 77 101249869
sly LOC101250047 protein PALE CRESS, chloroplastic 101250047
sly TFAM2 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 101250119
sly LOC101250160 protein pleiotropic regulatory locus 1 101250160
sly LOC101250299 uncharacterized LOC101250299 101250299
sly LOC101250449 exosome complex component RRP41 homolog 101250449
sly LOC101250608 sm-like protein LSM2 101250608
sly LOC101250651 probable splicing factor 3A subunit 1 101250651
sly LOC101250657 small nuclear ribonucleoprotein SmD3b 101250657
sly LOC101250744 uncharacterized LOC101250744 101250744
sly LOC101250862 protein BUD31 homolog-like 101250862
sly LOC101250912 NAD-capped RNA hydrolase DXO1 101250912
sly LOC101250965 uncharacterized LOC101250965 101250965
sly LOC101250971 chloride conductance regulatory protein ICln 101250971
sly LOC101251039 septin and tuftelin-interacting protein 1 homolog 1 101251039
sly LOC101251141 splicing factor U2AF-associated protein 2 101251141
sly LOC101251182 uncharacterized LOC101251182 101251182
sly LOC101251485 small nuclear ribonucleoprotein SmD1b 101251485
sly LOC101251491 uncharacterized LOC101251491 101251491
sly PELOTA protein pelota homolog 101251671
sly LOC101251795 uncharacterized LOC101251795 101251795
sly LOC101251854 sm-like protein LSM1B 101251854
sly LOC101251873 protein high chlorophyll fluorescent 107 101251873
sly LOC101251944 splicing factor U2af large subunit A 101251944
sly LOC101251946 multiple organellar RNA editing factor 1, mitochondrial-like 101251946
sly LOC101251965 zinc finger CCCH domain-containing protein 25 101251965
sly LOC101252038 U11/U12 small nuclear ribonucleoprotein 25 kDa protein 101252038
sly LOC101252047 cleavage stimulating factor 64 101252047
sly LOC101252107 serrate RNA effector molecule 101252107
sly LOC101252126 nuclear intron maturase 1, mitochondrial 101252126
sly LOC101252182 mRNA-decapping enzyme subunit 2 101252182
sly LOC101252197 110 kDa U5 small nuclear ribonucleoprotein component CLO 101252197
sly LOC101252285 multiple organellar RNA editing factor 2, chloroplastic 101252285
sly LOC101252299 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like 101252299
sly LOC101252328 pre-mRNA-splicing factor SLU7 101252328
sly LOC101252597 sm-like protein LSM1B 101252597
sly LOC101252641 uncharacterized LOC101252641 101252641
sly LOC101252715 COP1 SUPPRESSOR 2-like protein 101252715
sly LOC101252831 splicing factor Cactin 101252831
sly LOC101253143 uncharacterized LOC101253143 101253143
sly LOC101253172 pre-mRNA-splicing factor SPF27 homolog 101253172
sly LOC101253269 uncharacterized LOC101253269 101253269
sly LOC101253276 regulator of nonsense transcripts UPF2 101253276
sly LOC101253282 RNA-binding motif protein 25 101253282
sly LOC101253354 RNA demethylase ALKBH9B-like 101253354
sly LOC101253366 uncharacterized LOC101253366 101253366
sly LOC101253413 mRNA cap guanine-N7 methyltransferase 1 101253413
sly LOC101253626 uncharacterized LOC101253626 101253626
sly LOC101253638 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 101253638
sly LOC101253667 protein PAT1 homolog 101253667
sly LOC101253688 serine/arginine-rich splicing factor RS2Z32 101253688
sly LOC101253723 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 101253723
sly LOC101253956 uncharacterized LOC101253956 101253956
sly LOC101254040 RNA demethylase ALKBH9B 101254040
sly LOC101254167 cleavage and polyadenylation specificity factor subunit 2 101254167
sly LOC101254180 sm-like protein LSM1B 101254180
sly LOC101254235 cleavage stimulating factor 64 101254235
sly LOC101254313 protein RRP6-like 3 101254313
sly LOC101254355 30-kDa cleavage and polyadenylation specificity factor 30 101254355
sly LOC101254445 nonsense-mediated mRNA decay factor SMG7-like 101254445
sly LOC101254498 mRNA-decapping enzyme-like protein 101254498
sly LOC101254575 splicing factor SF3a60 homolog 101254575
sly LOC101254653 U1 small nuclear ribonucleoprotein 70 kDa 101254653
sly LOC101254930 THO complex subunit 7A 101254930
sly LOC101255099 protein RDM16 101255099
sly LOC101255259 H/ACA ribonucleoprotein complex subunit 4 101255259
sly LOC101255333 ubiquitin-like protein 5 101255333
sly LOC101255434 probable U6 snRNA-associated Sm-like protein LSm4 101255434
sly LOC101255473 carbon catabolite repressor protein 4 homolog 1-like 101255473
sly LOC101255621 uncharacterized LOC101255621 101255621
sly LOC101255746 uncharacterized LOC101255746 101255746
sly LOC101256011 pre-mRNA-processing protein 40A 101256011
sly LOC101256146 polyribonucleotide nucleotidyltransferase 2, mitochondrial 101256146
sly LOC101256312 exosome complex exonuclease RRP46 homolog 101256312
sly LOC101256441 mRNA cap guanine-N7 methyltransferase 2 101256441
sly LOC101256472 U4/U6 small nuclear ribonucleoprotein PRP4-like protein 101256472
sly LOC101256523 sm-like protein LSM5 101256523
sly LOC101256541 small nuclear ribonucleoprotein SmD3b 101256541
sly LOC101256738 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 101256738
sly LOC101256753 uncharacterized LOC101256753 101256753
sly LOC101256781 probable NOT transcription complex subunit VIP2 101256781
sly LOC101256810 U11/U12 small nuclear ribonucleoprotein 35 kDa protein 101256810
sly LOC101256818 carbon catabolite repressor protein 4 homolog 1 101256818
sly LOC101256945 SNW/SKI-interacting protein A 101256945
sly LOC101256990 uncharacterized LOC101256990 101256990
sly LOC101257075 protein PAT1 homolog 1-like 101257075
sly LOC101257116 serine/arginine-rich splicing factor SR45 101257116
sly LOC101257199 regulator of nonsense transcripts 1 homolog 101257199
sly LOC101257283 uncharacterized LOC101257283 101257283
sly LOC101257364 protein SICKLE 101257364
sly LOC101257403 uncharacterized LOC101257403 101257403
sly LOC101257538 uncharacterized LOC101257538 101257538
sly LOC101257606 zinc finger CCCH domain-containing protein 5 101257606
sly LOC101257622 uncharacterized LOC101257622 101257622
sly LOC101257765 pentatricopeptide repeat-containing protein At1g34160 101257765
sly LOC101258239 uncharacterized LOC101258239 101258239
sly LOC101258324 RNA demethylase ALKBH9B 101258324
sly LOC101258325 uncharacterized LOC101258325 101258325
sly LOC101258480 uncharacterized LOC101258480 101258480
sly LOC101258563 protein RDM16-like 101258563
sly LOC101258685 nuclear intron maturase 2, mitochondrial 101258685
sly LOC101258724 probable NOT transcription complex subunit VIP2 101258724
sly LOC101258786 serine/arginine-rich splicing factor RS31 101258786
sly LOC101258879 regulator of nonsense transcripts 1 homolog 101258879
sly LOC101258918 pre-mRNA-processing factor 39-2 101258918
sly LOC101258968 RNA demethylase ALKBH10B-like 101258968
sly LOC101258986 sm-like protein LSM7 101258986
sly LOC101259053 uncharacterized LOC101259053 101259053
sly LOC101259103 uncharacterized LOC101259103 101259103
sly LOC101259137 FIP1[III]-like protein 101259137
sly LOC101259148 uncharacterized LOC101259148 101259148
sly LOC101259183 SUPPRESSOR OF ABI3-5 101259183
sly LOC101259321 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like 101259321
sly LOC101259365 uncharacterized LOC101259365 101259365
sly LOC101259473 serine/arginine-rich SC35-like splicing factor SCL33 101259473
sly LOC101259518 uncharacterized LOC101259518 101259518
sly LOC101259626 uncharacterized LOC101259626 101259626
sly LOC101259647 suppressor of mec-8 and unc-52 protein homolog 2 101259647
sly LOC101259714 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 101259714
sly LOC101259928 DEAD-box ATP-dependent RNA helicase 35 101259928
sly LOC101259995 uncharacterized LOC101259995 101259995
sly LOC101259997 uncharacterized LOC101259997 101259997
sly LOC101260491 probable small nuclear ribonucleoprotein F 101260491
sly LOC101260608 protein PAT1 homolog 2 101260608
sly LOC101260667 organelle RRM domain-containing protein 6, chloroplastic 101260667
sly LOC101260827 DEAD-box ATP-dependent RNA helicase 35 101260827
sly LOC101260873 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like 101260873
sly LOC101260874 uncharacterized LOC101260874 101260874
sly LOC101260908 uncharacterized LOC101260908 101260908
sly LOC101260939 exosome complex component RRP41-like 101260939
sly LOC101260949 pre-mRNA-splicing factor SLU7 101260949
sly LOC101261013 RNA demethylase ALKBH10B 101261013
sly LOC101261054 U4/U6 small nuclear ribonucleoprotein Prp31 101261054
sly LOC101261183 uncharacterized LOC101261183 101261183
sly LOC101261244 FIP1[V]-like protein 101261244
sly LOC101261518 THO complex subunit 2 101261518
sly LOC101261575 uncharacterized LOC101261575 101261575
sly LOC101261831 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like 101261831
sly LOC101261833 pre-mRNA-processing-splicing factor 8A 101261833
sly LOC101261976 uncharacterized LOC101261976 101261976
sly LOC101262002 SUPPRESSOR OF ABI3-5 101262002
sly LOC101262023 lariat debranching enzyme 101262023
sly LOC101262055 uncharacterized LOC101262055 101262055
sly LOC101262247 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like 101262247
sly LOC101262521 uncharacterized LOC101262521 101262521
sly LOC101262527 uncharacterized LOC101262527 101262527
sly LOC101262583 serine/threonine-protein kinase/endoribonuclease IRE1a 101262583
sly LOC101262885 SNW/SKI-interacting protein-like 101262885
sly LOC101262959 uncharacterized LOC101262959 101262959
sly LOC101263053 uncharacterized LOC101263053 101263053
sly LOC101263057 serine/arginine-rich splicing factor RS41 101263057
sly LOC101263164 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 101263164
sly LOC101263168 regulator of nonsense transcripts UPF3-like 101263168
sly LOC101263271 DNA-damage-repair/toleration protein DRT111, chloroplastic 101263271
sly LOC101263457 multiple organellar RNA editing factor 3, mitochondrial 101263457
sly LOC101263464 pre-mRNA-processing factor 19 101263464
sly LOC101263473 uncharacterized LOC101263473 101263473
sly LOC101263485 splicing factor U2af large subunit B 101263485
sly LOC101263517 exosome complex component RRP45A 101263517
sly LOC101263601 thioredoxin-like protein YLS8 101263601
sly LOC101263614 uncharacterized LOC101263614 101263614
sly LOC101263702 serine/threonine-protein kinase/endoribonuclease IRE1b-like 101263702
sly LOC101263748 U1 small nuclear ribonucleoprotein C-like 101263748
sly LOC101263781 uncharacterized LOC101263781 101263781
sly LOC101263820 organelle RRM domain-containing protein 6, chloroplastic 101263820
sly LOC101263922 uncharacterized LOC101263922 101263922
sly LOC101263950 30-kDa cleavage and polyadenylation specificity factor 30 101263950
sly LOC101263952 splicing factor U2af small subunit B 101263952
sly LOC101263979 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 101263979
sly LOC101264097 serine/arginine-rich splicing factor RS31 101264097
sly LOC101264103 protein MLN51 homolog 101264103
sly LOC101264125 DExH-box ATP-dependent RNA helicase DExH11 101264125
sly LOC101264258 uncharacterized LOC101264258 101264258
sly LOC101264277 sm-like protein LSM3A 101264277
sly LOC101264429 multiple organellar RNA editing factor 2, chloroplastic 101264429
sly LOC101264445 organelle RRM domain-containing protein 2, mitochondrial 101264445
sly LOC101264474 uncharacterized LOC101264474 101264474
sly LOC101264588 small RNA-binding protein 11, chloroplastic 101264588
sly LOC101264599 cleavage stimulation factor subunit 50 101264599
sly LOC101264766 regulator of nonsense transcripts UPF3 101264766
sly LOC101264965 protein BUD31 homolog 2 101264965
sly LOC101264989 probable small nuclear ribonucleoprotein G 101264989
sly LOC101265451 protein STABILIZED1 101265451
sly LOC101265516 uncharacterized LOC101265516 101265516
sly LOC101265686 thioredoxin-like protein YLS8 101265686
sly LOC101265694 uncharacterized LOC101265694 101265694
sly LOC101265747 cleavage and polyadenylation specificity factor subunit 3-I 101265747
sly LOC101265967 uncharacterized LOC101265967 101265967
sly LOC101266026 uncharacterized LOC101266026 101266026
sly LOC101266050 serine/arginine-rich splicing factor RSZ22 101266050
sly LOC101266099 splicing factor U2af large subunit B 101266099
sly LOC101266217 transcriptional repressor ILP1 101266217
sly LOC101266237 uncharacterized LOC101266237 101266237
sly LOC101266273 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 101266273
sly LOC101266382 uncharacterized LOC101266382 101266382
sly LOC101266504 spliceosome-associated protein 130 A 101266504
sly LOC101266564 serine/arginine-rich splicing factor RS31 101266564
sly LOC101266891 U11/U12 small nuclear ribonucleoprotein 31 kDa protein 101266891
sly LOC101267011 mRNA cap guanine-N7 methyltransferase 1-like 101267011
sly LOC101267079 DEAD-box ATP-dependent RNA helicase 21 101267079
sly LOC101267083 pre-mRNA-processing protein 40A 101267083
sly LOC101267328 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 101267328
sly LOC101267402 uncharacterized LOC101267402 101267402
sly LOC101267415 sm-like protein LSM8 101267415
sly LOC101267636 RNA recognition motif (RRM) domain-containg protein 101267636
sly LOC101267646 RNA demethylase ALKBH10B 101267646
sly LOC101267649 uncharacterized LOC101267649 101267649
sly LOC101267678 uncharacterized LOC101267678 101267678
sly LOC101267843 protein gar2 101267843
sly LOC101267935 uncharacterized LOC101267935 101267935
sly LOC101268001 uncharacterized LOC101268001 101268001
sly LOC101268011 enhancer of mRNA-decapping protein 4-like 101268011
sly LOC101268042 uncharacterized LOC101268042 101268042
sly LOC101268064 THO complex subunit 7A 101268064
sly LOC101268140 uncharacterized LOC101268140 101268140
sly LOC101268414 uncharacterized LOC101268414 101268414
sly LOC101268477 uncharacterized LOC101268477 101268477
sly LOC101268545 nuclear cap-binding protein subunit 2 101268545
sly LOC101268600 protein MOS2 101268600
sly LOC101268815 sm-like protein LSM36B 101268815
sly LOC104647600 uncharacterized LOC104647600 104647600
sly LOC104648404 cell differentiation protein rcd1-like 104648404
sly LOC104649355 sm-like protein LSM2 104649355
sly LOC104649492 uncharacterized LOC104649492 104649492
sly LOC109120479 DExH-box ATP-dependent RNA helicase DExH12-like 109120479
sly LOC112941509 uncharacterized LOC112941509 112941509
sly LOC112941881 uncharacterized LOC112941881 112941881
sly LOC112941882 uncharacterized LOC112941882 112941882
sly LOC138337026 DEAD-box ATP-dependent RNA helicase 42 138337026
sly LOC138338972 protein PELOTA 1-like 138338972
sly LOC138341837 uncharacterized LOC138341837 138341837
sly LOC138348932 uncharacterized LOC138348932 138348932


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