GO:0009639 response to red or far red light
| 221 ath genes in this database. |
| 71 gma genes in this database. |
| 30 sly genes in this database. |
| 33 osa genes in this database. |
| 47 zma genes in this database. |
| 58 bra genes in this database. |
| 29 vvi genes in this database. |
| 47 ppo genes in this database. |
| 29 mtr genes in this database. |
| 128 tae genes in this database. |
| 38 hvu genes in this database. |
| 115 ghi genes in this database. |
| 119 bna genes in this database. |
| 3 cre genes in this database. |
| 33 sbi genes in this database. |
| 34 sot genes in this database. |
| 28 cit genes in this database. |
| 37 bdi genes in this database. |
| 68 nta genes in this database. |
[QuickGO]
term: response to red or far red light
goid: GO:0009639
Shaded genes do not have GeneChip data. The output was limited up to 10000.
| Species | Symbol | Gene coexpression |
Locus page |
Full name* | Entrez Gene ID | Evidence* |
|---|---|---|---|---|---|---|
| ath | RGA1 |  |
 |
GRAS family transcription factor family protein | 814686 | |
| ath | PKS1 | |
|
phytochrome kinase substrate 1 | 814823 | |
| ath | CR88 | |
|
Chaperone protein htpG family protein | 814930 | |
| ath | LHCB2.2 | |
|
photosystem II light harvesting complex protein 2.2 | 815055 | |
| ath | LHCB2.1 | |
|
photosystem II light harvesting complex protein 2.1 | 815058 | |
| ath | MBR1 | |
|
RING/U-box superfamily protein | 816045 | |
| ath | AT2G17990 | |
|
polyamine-modulated factor 1-binding protein | 816311 | IEA |
| ath | PHYB | |
|
phytochrome B | 816394 | |
| ath | PIL5 | |
|
phytochrome interacting factor 3-like 5 | 816538 | |
| ath | XCT | |
|
XAP5 family protein | 816650 | |
| ath | MEE3 | |
|
Homeodomain-like superfamily protein | 816703 | |
| ath | AFR | |
|
Galactose oxidase/kelch repeat superfamily protein | 816990 | |
| ath | COL3 | |
|
CONSTANS-like 3 | 817016 | |
| ath | ELF3 | |
|
hydroxyproline-rich glycoprotein family protein | 817134 | |
| ath | TED4 | |
|
Plant heme oxygenase (decyclizing) family protein | 817208 | |
| ath | FUS12 | |
|
proteasome family protein | 817241 | |
| ath | CYP707A2 | |
|
cytochrome P450, family 707, subfamily A, polypeptide 2 | 817457 | IEP |
| ath | ADS2 | |
|
16:0delta9 desaturase 2 | 817694 | |
| ath | AT2G32130 | |
intracellular protein transporter, putative (DUF641) | 817772 | IEA | |
| ath | COP1 | |
|
Transducin/WD40 repeat-like superfamily protein | 817857 | |
| ath | PTAC12 | |
|
plastid transcriptionally active 12 | 818029 | |
| ath | BLH1 | |
|
BEL1-like homeodomain 1 | 818167 | |
| ath | ABCB1 | |
|
ATP binding cassette subfamily B1 | 818265 | IMP |
| ath | EXP3 | |
|
Barwin-like endoglucanases superfamily protein | 818341 | |
| ath | SOUL-1 | |
|
SOUL heme-binding family protein | 818374 | |
| ath | TOPP4 | |
|
type one serine/threonine protein phosphatase 4 | 818571 | |
| ath | COI1 | |
|
RNI-like superfamily protein | 818581 | |
| ath | ELF4 | |
|
EARLY FLOWERING-like protein (DUF1313) | 818596 | |
| ath | COR15A | |
|
cold-regulated 15a | 818854 | |
| ath | PP5.2 | |
|
protein phosphatase 5.2 | 818881 | |
| ath | PAR1 | |
|
phy rapidly regulated 1 | 818887 | |
| ath | PIF4 | |
|
phytochrome interacting factor 4 | 818903 | |
| ath | HB4 | |
|
homeobox-leucine zipper protein 4 | 819100 | |
| ath | AT2G45260 | |
|
myosin-4 protein (DUF641) | 819134 | IEA |
| ath | AHL22 | |
|
AT-hook motif nuclear-localized protein 22 | 819151 | |
| ath | LRB1 | |
|
BTB/POZ/Kelch-associated protein | 819234 | |
| ath | SPA1 | |
|
SPA (suppressor of phyA-105) protein family | 819242 | |
| ath | JAR1 | |
|
Auxin-responsive GH3 family protein | 819244 | |
| ath | DAG2 | |
|
Dof-type zinc finger DNA-binding family protein | 819271 | |
| ath | PRR9 | |
|
pseudo-response regulator 9 | 819292 | |
| ath | PIL1 | |
|
phytochrome interacting factor 3-like 1 | 819311 | |
| ath | RFI2 | |
|
RING/U-box superfamily protein | 819383 | |
| ath | AT2G47890 | |
|
B-box type zinc finger protein with CCT domain-containing protein | 819401 | |
| ath | ATAB2 | |
|
RNA binding protein | 819992 | |
| ath | BIG | |
|
auxin transport protein (BIG) | 820398 | |
| ath | AT3G14870 | |
|
hypothetical protein (DUF641) | 820716 | IEA |
| ath | SPA3 | |
|
SPA1-related 3 | 820767 | |
| ath | HCF107 | |
|
high chlorophyll fluorescent 107 | 820961 | |
| ath | HDA15 | |
|
histone deacetylase 15 | 821382 | |
| ath | ACT2 | |
|
actin 2 | 821411 | |
| ath | BBX32 | |
|
B-box 32 | 821667 | |
| ath | FHY3 | |
|
far-red elongated hypocotyls 3 | 821781 | |
| ath | ELIP1 | |
|
Chlorophyll A-B binding family protein | 821855 | |
| ath | NCED6 | |
|
nine-cis-epoxycarotenoid dioxygenase 6 | 822008 | IEP |
| ath | RTFL16 | |
|
ROTUNDIFOLIA like 16 | 822160 | |
| ath | LHCB2.3 | |
|
photosystem II light harvesting complex protein 2.3 | 822391 | |
| ath | ABCB19 | |
|
ATP binding cassette subfamily B19 | 822519 | IMP |
| ath | BNQ3 | |
BANQUO 3 | 823925 | ||
| ath | RR5 | |
|
response regulator 5 | 823965 | |
| ath | SPT1 | |
|
serine palmitoyltransferase 1 | 824039 | |
| ath | AMP1 | |
|
Peptidase M28 family protein | 824637 | |
| ath | OBP3 | |
|
OBF-binding protein 3 | 824703 | |
| ath | LAF3 | |
|
Amidohydrolase family | 824751 | |
| ath | EIF3E | |
|
eukaryotic translation initiation factor 3E | 824896 | |
| ath | PAR2 | |
|
phy rapidly regulated 2 | 825054 | |
| ath | PIL6 | |
|
phytochrome interacting factor 3-like 6 | 825075 | |
| ath | AT3G59780 | |
|
Rhodanese/Cell cycle control phosphatase superfamily protein | 825147 | |
| ath | AT3G60680 | |
|
DUF641 family protein (DUF641) | 825239 | IEA |
| ath | FUS6 | |
|
COP9 signalosome complex subunit 1 | 825286 | |
| ath | POB1 | |
|
POZ/BTB containin G-protein 1 | 825333 | |
| ath | DAG1 | |
|
Dof-type zinc finger DNA-binding family protein | 825358 | IMP |
| ath | PIL2 | |
|
phytochrome interacting factor 3-like 2 | 825382 | |
| ath | CRY1 | |
|
cryptochrome 1 | 826470 | |
| ath | SPA2 | |
|
SPA1-related 2 | 826712 | |
| ath | AT4G13790 | |
|
SAUR-like auxin-responsive protein family | 827013 | |
| ath | COP9 | |
|
COP9 signalosome, subunit CSN8 | 827049 | |
| ath | XTH15 | |
|
xyloglucan endotransglucosylase/hydrolase 15 | 827051 | |
| ath | ELIP2 | |
|
Chlorophyll A-B binding family protein | 827119 | |
| ath | FAR1 | |
|
FRS (FAR1 Related Sequences) transcription factor family | 827173 | IMP |
| ath | PHYD | |
|
phytochrome D | 827319 | |
| ath | HB-2 | |
|
homeobox protein 2 | 827384 | |
| ath | PHYE | |
|
phytochrome E | 827538 | |
| ath | CYP707A1 | |
|
cytochrome P450, family 707, subfamily A, polypeptide 1 | 827663 | IEP |
| ath | EID1 | |
|
F-box family protein | 828008 | |
| ath | UNE10 | |
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 828175 | |
| ath | PMSR4 | |
|
peptide met sulfoxide reductase 4 | 828616 | |
| ath | AT4G25260 | |
|
Plant invertase/pectin methylesterase inhibitor superfamily protein | 828629 | |
| ath | SHB1 | |
|
EXS (ERD1/XPR1/SYG1) family protein | 828638 | |
| ath | LAF1 | |
|
myb domain protein 18 | 828661 | IMP |
| ath | CGA1 | |
|
cytokinin-responsive gata factor 1 | 828721 | |
| ath | ckl4 | |
|
casein kinase I-like 4 | 829007 | |
| ath | ckl3 | |
|
casein kinase I-like 3 | 829009 | |
| ath | ACDO1 | |
|
Protein kinase superfamily protein | 829266 | |
| ath | CYP83B1 | |
|
cytochrome P450, family 83, subfamily B, polypeptide 1 | 829277 | |
| ath | AT4G32250 | |
|
Protein kinase superfamily protein | 829358 | |
| ath | IAA29 | |
|
indole-3-acetic acid inducible 29 | 829361 | |
| ath | AT4G32700 | |
|
MUS308 and mammalian DNA polymerase-like protein | 829406 | |
| ath | ATH1 | |
|
homeobox protein ATH1 | 829435 | |
| ath | AT4G33320 | |
myosin-4 protein (DUF641) | 829468 | IEA | |
| ath | AT4G33980 | |
|
uncharacterized protein | 829544 | |
| ath | MBR2 | |
|
RING/U-box superfamily protein | 829550 | |
| ath | AT4G34080 | |
myosin-4 protein (DUF641) | 829554 | IEA | |
| ath | AT4G36100 | |
Sec1/munc18-like (SM) proteins superfamily | 829766 | IEA | |
| ath | AT4G36105 | |
|
polyamine-modulated factor 1-binding protein | 829767 | IEA |
| ath | SAUR9 | |
|
SAUR-like auxin-responsive protein family | 829768 | IEP |
| ath | CP1 | |
|
cysteine proteinase1 | 829841 | |
| ath | SPT | |
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 829847 | |
| ath | KAI2 | |
|
alpha/beta-Hydrolases superfamily protein | 829902 | |
| ath | HLS1 | |
|
Acyl-CoA N-acyltransferases (NAT) superfamily protein | 829913 | |
| ath | ROC1 | |
|
rotamase CYP 1 | 830029 | |
| ath | AT4G38860 | |
|
SAUR-like auxin-responsive protein family | 830041 | IEP |
| ath | BBX19 | |
|
B-box type zinc finger family protein | 830051 | |
| ath | PKS4 | |
|
phytochrome kinase substrate 4 | 830297 | |
| ath | AT5G06550 | |
|
transferring glycosyl group transferase | 830543 | |
| ath | FHL | |
|
far-red-elongated hypocotyl1-like protein | 830832 | IEA |
| ath | AT5G10200 | |
|
ARM-repeat/Tetratricopeptide repeat (TPR)-like protein | 830884 | |
| ath | ANN6 | |
|
annexin 6 | 830886 | IEP |
| ath | HY5 | |
|
Basic-leucine zipper (bZIP) transcription factor family protein | 830996 | |
| ath | COP13 | |
|
Proteasome component (PCI) domain protein | 831275 | |
| ath | BNQ2 | |
|
BANQUO 2 | 831368 | |
| ath | CO | |
|
B-box type zinc finger protein with CCT domain-containing protein | 831441 | |
| ath | KIN1 | |
|
stress-responsive protein (KIN1) / stress-induced protein (KIN1) | 831453 | |
| ath | CSA1 | |
|
disease resistance protein (TIR-NBS-LRR class) | 831656 | |
| ath | PRR7 | |
|
pseudo-response regulator 7 | 831793 | |
| ath | AT5G03500 | |
|
Mediator complex, subunit Med7 | 831822 | |
| ath | AT5G03220 | |
|
Mediator complex, subunit Med7 | 831902 | |
| ath | AT5G20170 | |
|
RNA polymerase II transcription mediator | 832140 | |
| ath | CDF1 | |
|
cell growth defect factor-like protein (DUF3353) | 832368 | |
| ath | CaS | |
|
calcium sensing receptor | 832370 | |
| ath | LCB2 | |
|
long chain base2 | 832432 | |
| ath | SIGE | |
|
sigma factor E | 832477 | |
| ath | PRR5 | |
|
two-component response regulator-like protein | 832518 | |
| ath | LSH1 | |
|
LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) | 832941 | |
| ath | PHYC | |
|
phytochrome C | 833570 | |
| ath | PRE1 | |
|
basic helix-loop-helix (bHLH) DNA-binding family protein | 833982 | |
| ath | COR27 | |
|
cold regulated protein 27 | 834301 | |
| ath | AT5G42940 | |
|
RING/U-box superfamily protein | 834306 | |
| ath | COP8 | |
|
Proteasome component (PCI) domain protein | 834312 | |
| ath | ABCI21 | |
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein | 834434 | |
| ath | CYP707A3 | |
|
cytochrome P450, family 707, subfamily A, polypeptide 3 | 834570 | IEP |
| ath | CUL4 | |
|
cullin4 | 834663 | |
| ath | CKB1 | |
|
casein kinase II beta chain 1 | 834754 | |
| ath | HAT2 | |
|
Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein | 834784 | |
| ath | PAT1 | |
|
GRAS family transcription factor | 834867 | |
| ath | HRB1 | |
|
Drought-responsive family protein | 834983 | |
| ath | GA20OX2 | |
|
gibberellin 20 oxidase 2 | 835256 | IEP |
| ath | RUP1 | |
|
Transducin/WD40 repeat-like superfamily protein | 835301 | |
| ath | GRF7 | |
|
growth-regulating factor 7 | 835447 | |
| ath | PORA | |
|
protochlorophyllide oxidoreductase A | 835507 | |
| ath | CSN6A | |
|
COP9 signalosome subunit 6A | 835727 | |
| ath | OXS3 | |
|
oxidative stress 3 | 835756 | |
| ath | ZTL | |
|
Galactose oxidase/kelch repeat superfamily protein | 835842 | |
| ath | GIL1 | |
|
glucose-6-phosphate isomerase, putative (DUF641) | 836013 | IMP |
| ath | SRR1 | |
|
sensitivity to red light reduced protein (SRR1) | 836075 | |
| ath | ANK6 | |
|
Ankyrin repeat family protein | 836244 | |
| ath | PIF7 | |
|
phytochrome-interacting factor7 | 836248 | |
| ath | AT5G61670 | |
|
orange protein | 836289 | |
| ath | AT5G63080 | |
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | 836428 | |
| ath | NDPK2 | |
|
nucleoside diphosphate kinase 2 | 836451 | |
| ath | AT5G63440 | |
|
hypothetical protein (DUF167) | 836463 | |
| ath | PP7 | |
|
serine/threonine phosphatase 7 | 836507 | |
| ath | LIP1 | |
|
Ras-related small GTP-binding family protein | 836603 | |
| ath | AT5G66250 | |
|
kinectin-like protein | 836757 | IEA |
| ath | ABA1 | |
|
zeaxanthin epoxidase (ZEP) (ABA1) | 836838 | |
| ath | STO | |
|
B-box zinc finger family protein | 837113 | |
| ath | ADS4 | |
|
Fatty acid desaturase family protein | 837146 | |
| ath | SIG2 | |
|
RNApolymerase sigma subunit 2 | 837376 | |
| ath | PIF3 | |
|
phytochrome interacting factor 3 | 837479 | IMP |
| ath | PHYA | |
|
phytochrome A | 837483 | |
| ath | ERD9 | |
|
Glutathione S-transferase family protein | 837576 | |
| ath | ARR4 | |
|
response regulator 4 | 837587 | |
| ath | RTFL17 | |
|
ROTUNDIFOLIA like 17 | 837884 | |
| ath | SBH2 | |
|
sphingoid base hydroxylase 2 | 837990 | |
| ath | GAI | |
|
GRAS family transcription factor family protein | 838057 | |
| ath | GA3OX1 | |
|
gibberellin 3-oxidase 1 | 838125 | IEP |
| ath | ESC | |
|
Putative AT-hook DNA-binding family protein | 838683 | |
| ath | PTAC6 | |
|
plastid transcriptionally active 6 | 838761 | |
| ath | PAPP2C | |
|
phytochrome-associated protein phosphatase type 2C | 838835 | |
| ath | GI | |
|
gigantea protein (GI) | 838883 | |
| ath | CSN5A | |
|
COP9 signalosome 5A | 838899 | |
| ath | PFT1 | |
|
phytochrome and flowering time regulatory protein (PFT1) | 839141 | |
| ath | CUL3 | |
|
cullin 3 | 839226 | IMP |
| ath | FUS5 | |
|
Proteasome component (PCI) domain protein | 839241 | |
| ath | HFR1 | |
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 839300 | |
| ath | GA2OX6 | |
|
gibberellin 2-oxidase 6 | 839508 | IEP |
| ath | UNE1 | |
|
intracellular protein transporter, putative (DUF641) | 839804 | IEA |
| ath | GA2OX2 | |
|
gibberellin 2-oxidase | 839883 | IEP |
| ath | NAC13 | |
|
NAC domain protein 13 | 840181 | |
| ath | AT1G45180 | |
|
RING/U-box superfamily protein | 841086 | |
| ath | AGO1 | |
|
Stabilizer of iron transporter SufD / Polynucleotidyl transferase | 841262 | |
| ath | TSA1 | |
|
TSK-associating protein 1 | 841671 | |
| ath | IAA6 | |
|
indole-3-acetic acid 6 | 841717 | |
| ath | SPA4 | |
|
SPA1-related 4 | 841743 | |
| ath | AT1G53380 | |
|
hypothetical protein (DUF641) | 841774 | IEA |
| ath | ARR3 | |
|
response regulator 3 | 842288 | |
| ath | AT1G61620 | |
|
phosphoinositide binding protein | 842458 | |
| ath | ANN5 | |
|
annexin 5 | 843137 | IEP |
| ath | EXPA1 | |
|
expansin A1 | 843288 | |
| ath | SBH1 | |
|
sphingoid base hydroxylase 1 | 843300 | |
| ath | TAA1 | |
|
uncharacterized protein | 843393 | |
| ath | CSN5B | |
|
COP9-signalosome 5B | 843463 | |
| ath | PIN1 | |
|
Auxin efflux carrier family protein | 843693 | |
| ath | BBX16 | |
|
B-box type zinc finger protein with CCT domain-containing protein | 843723 | |
| ath | MIF1 | |
|
mini zinc finger 1 | 843805 | |
| ath | SRS5 | |
|
SHI-related sequence 5 | 843888 | |
| ath | BBX21 | |
|
salt tolerance homolog2 | 843890 | |
| ath | SOB3 | |
|
Putative AT-hook DNA-binding family protein | 843983 | |
| ath | RAP2.4 | |
|
uncharacterized protein | 844143 | |
| ath | LZF1 | |
|
light-regulated zinc finger protein 1 | 844196 | |
| ath | AT1G79600 | |
|
Protein kinase superfamily protein | 844298 | |
| ath | TED3 | |
|
Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein | 844320 | |
| ath | GA3OX2 | |
|
gibberellin 3-oxidase 2 | 844374 | IEP |
| ath | AT1G80360 | |
|
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | 844376 | |
| ath | ZFP1 | |
|
zinc-finger protein 1 | 844412 | |
| ath | RTFL21 | |
|
ROTUNDIFOLIA like 21 | 5007837 | |
| ath | FHY1 | |
|
far-red elongated hypocotyl 1 | 5007942 | IMP |
| ath | AT2G18010 | |
SAUR-like auxin-responsive protein family | 28718283 | IEP | |
| ath | AT2G30380 | |
MYB family transcription factor | 28718318 | IEA | |
| ath | RTFL13 | |
ROTUNDIFOLIA like 13 | 28719310 | ||
| ath | FLP1 | |
|
flowering-promoting factor-like protein | 28720195 | |
| ath | RTFL18 | |
ROTUNDIFOLIA like 18 | 28721166 |
