GO:0006325 chromatin organization
| 231 ath genes in this database. |
| 276 gma genes in this database. |
| 175 sly genes in this database. |
| 144 osa genes in this database. |
| 181 zma genes in this database. |
| 202 bra genes in this database. |
| 114 vvi genes in this database. |
| 166 ppo genes in this database. |
| 180 mtr genes in this database. |
| 478 tae genes in this database. |
| 195 hvu genes in this database. |
| 394 ghi genes in this database. |
| 438 bna genes in this database. |
| 120 cre genes in this database. |
| 130 sbi genes in this database. |
| 152 sot genes in this database. |
| 106 cit genes in this database. |
| 140 bdi genes in this database. |
| 289 nta genes in this database. |
[QuickGO]
term: chromatin organization
goid: GO:0006325
Shaded genes do not have GeneChip data. The output was limited up to 10000.
| Species | Symbol | Gene coexpression |
Locus page |
Full name* | Entrez Gene ID | Evidence* |
|---|---|---|---|---|---|---|
| ath | DRD1 |  |
 |
SNF2 domain-containing protein / helicase domain-containing protein | 816136 | |
| ath | AT2G16490 | |
XH domain-containing protein | 816148 | ||
| ath | PHYB | |
|
phytochrome B | 816394 | IMP |
| ath | VEL3 | |
vernalization5/VIN3-like protein | 816402 | ||
| ath | VEL2 | |
|
vernalization5/VIN3-like protein | 816404 | |
| ath | FVE | |
|
Transducin family protein / WD-40 repeat family protein | 816471 | |
| ath | CHR34 | |
|
chromatin remodeling 34 | 816684 | |
| ath | GEM | |
|
GRAM domain family protein | 816780 | |
| ath | CKA3 | |
|
Protein kinase superfamily protein | 816838 | IDA,IEP |
| ath | CLF | |
|
SET domain-containing protein | 816870 | |
| ath | SUVR5 | |
|
histone-lysine N-methyltransferase SUVR5 | 816905 | |
| ath | SDG21 | |
SET domain group 21 | 817010 | ||
| ath | PKL | |
|
chromatin remodeling factor CHD3 (PICKLE) | 817055 | |
| ath | AGO4 | |
|
Argonaute family protein | 817246 | |
| ath | OTLD1 | |
|
OTU-like cysteine protease family protein | 817278 | |
| ath | AT2G28240 | |
|
ATP-dependent helicase family protein | 817370 | |
| ath | SYD | |
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein | 817375 | |
| ath | RDM4 | |
|
RNA-directed DNA methylation 4 | 817578 | |
| ath | ATX1 | |
|
homologue of trithorax | 817721 | |
| ath | SUVH2 | |
|
SU(VAR)3-9 homolog 2 | 817892 | |
| ath | SWI3B | |
|
switch subunit 3 | 817927 | |
| ath | MEE27 | |
|
Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | 818053 | |
| ath | SUVH5 | |
|
SU(VAR)3-9 homolog 5 | 818083 | |
| ath | FIS2 | |
|
VEFS-Box of polycomb protein | 818136 | |
| ath | SWC2 | |
|
DNA binding protein SWC2 | 818246 | |
| ath | UBP5 | |
|
ubiquitin-specific protease 5 | 818691 | |
| ath | AT2G42940 | |
|
Putative AT-hook DNA-binding family protein | 818895 | |
| ath | FPA | |
|
RNA binding protein | 818942 | |
| ath | BRM | |
|
transcription regulatory protein SNF2 | 819210 | |
| ath | AT2G47350 | |
|
HIT zinc finger and PAPA-1-like domain-containing protein | 819348 | |
| ath | SWI3A | |
|
SWITCH/sucrose nonfermenting 3A | 819375 | |
| ath | SUVR4 | |
|
SET-domain containing protein lysine methyltransferase family protein | 819593 | |
| ath | AT3G06660 | |
|
PAPA-1-like family protein / zinc finger (HIT type) family protein | 819851 | |
| ath | PRMT4B | |
|
protein arginine methyltransferase 4B | 819878 | |
| ath | FHA2 | |
|
SMAD/FHA domain-containing protein | 819910 | |
| ath | IBM1 | |
|
Transcription factor jumonji (jmjC) domain-containing protein | 819952 | |
| ath | PTAC13 | |
|
plastid transcriptionally active 13 | 820077 | |
| ath | AT3G09670 | |
|
Tudor/PWWP/MBT superfamily protein | 820124 | |
| ath | NAC050 | |
|
NAC domain containing protein 50 | 820212 | |
| ath | NAC052 | |
|
NAC domain containing protein 52 | 820213 | |
| ath | AT3G11100 | |
|
sequence-specific DNA binding transcription factor | 820281 | |
| ath | FDM3 | |
|
XH/XS domain-containing protein | 820435 | |
| ath | ROS4 | |
|
Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | 820727 | |
| ath | DRM3 | |
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 820994 | |
| ath | BSH | |
|
transcription regulatory protein SNF5, putative (BSH) | 821025 | |
| ath | MBD9 | |
|
methyl-CPG-binding domain 9 | 821132 | |
| ath | AT3G02890 | |
|
RING/FYVE/PHD zinc finger superfamily protein | 821192 | |
| ath | DCL2 | |
|
dicer-like 2 | 821300 | |
| ath | HDA15 | |
|
histone deacetylase 15 | 821382 | |
| ath | NUC-L2 | |
|
nucleolin like 2 | 821392 | |
| ath | TSK | |
|
tetratricopeptide repeat (TPR)-containing protein | 821404 | |
| ath | AT3G20010 | |
|
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein | 821539 | |
| ath | FIE | |
|
Transducin/WD40 repeat-like superfamily protein | 821622 | |
| ath | EIN3 | |
|
Ethylene insensitive 3 family protein | 821625 | |
| ath | JMJD5 | |
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | 821629 | |
| ath | ATXR2 | |
|
histone-lysine N-methyltransferase ATXR2 | 821736 | |
| ath | RDM1 | |
|
RNA-DIRECTED DNA METHYLATION 1 | 821839 | |
| ath | NRPD2A | |
|
nuclear RNA polymerase D2A | 821960 | |
| ath | CHR40 | |
|
chromatin remodeling 40 | 822023 | |
| ath | VRN5 | |
|
Fibronectin type III domain-containing protein | 822034 | |
| ath | AT3G29375 | |
|
XH domain-containing protein | 822597 | |
| ath | AT3G31900 | |
ATP-dependent helicase family protein | 822923 | ||
| ath | AT3G32280 | |
|
ATP-dependent helicase family protein | 823000 | |
| ath | AT3G32330 | |
DNA repair protein-like protein | 823009 | ||
| ath | ARP6 | |
|
actin-related protein 6 | 823150 | |
| ath | AT3G42660 | |
|
transducin family protein / WD-40 repeat family protein | 823286 | |
| ath | CHR38 | |
|
chromatin remodeling 38 | 823287 | |
| ath | DCL3 | |
|
dicer-like 3 | 823508 | |
| ath | HIRA | |
|
histone chaperone HIRA-like protein | 823578 | |
| ath | CYP71 | |
|
cyclophilin71 | 823585 | |
| ath | AT3G45880 | |
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | 823731 | |
| ath | REF6 | |
|
relative of early flowering 6 | 824002 | |
| ath | AT3G48480 | |
|
Cysteine proteinases superfamily protein | 824007 | |
| ath | IDN2 | |
|
XH/XS domain-containing protein | 824027 | |
| ath | AT3G48710 | |
|
DEK domain-containing chromatin associated protein | 824032 | |
| ath | DMS3 | |
|
defective in meristem silencing 3 | 824086 | |
| ath | AT3G49840 | |
|
transmembrane protein (DUF2215) | 824146 | IGI |
| ath | TRB3 | |
|
telomere repeat binding factor 3 | 824147 | |
| ath | CKA2 | |
|
casein kinase II, alpha chain 2 | 824162 | IDA,IEP |
| ath | AT3G52250 | |
|
Duplicated homeodomain-like superfamily protein | 824390 | |
| ath | GTE6 | |
|
general transcription factor group E6 | 824393 | |
| ath | AT3G54760 | |
|
dentin sialophosphoprotein-like protein | 824641 | |
| ath | AT3G57060 | |
|
binding protein | 824873 | IMP |
| ath | ARP7 | |
|
actin-related protein 7 | 825254 | TAS |
| ath | SDG14 | |
|
SET domain protein 14 | 825347 | |
| ath | AT3G63270 | |
|
nuclease | 825502 | |
| ath | AT4G04260 | |
Bromo-adjacent homology (BAH) domain-containing protein | 825742 | ||
| ath | GIP1 | |
|
AtGCP3 interacting protein 1 | 826539 | |
| ath | AT4G11560 | |
|
bromo-adjacent homology (BAH) domain-containing protein | 826760 | |
| ath | SUVH9 | |
|
SU(VAR)3-9 homolog 9 | 826978 | |
| ath | SMAP1 | |
|
small acidic protein 1 | 826984 | |
| ath | HOG1 | |
|
S-adenosyl-L-homocysteine hydrolase | 827028 | |
| ath | SDG2 | |
|
SET domain protein 2 | 827183 | |
| ath | AT4G15890 | |
|
binding protein | 827271 | IMP |
| ath | NRPB9B | |
|
RNA polymerases M/15 Kd subunit | 827321 | |
| ath | FCA | |
|
flowering time control protein FCA | 827323 | |
| ath | VRN2 | |
|
VEFS-Box of polycomb protein | 827392 | |
| ath | SNI1 | |
|
negative regulator of systemic acquired resistance (SNI1) | 827577 | |
| ath | JMJ14 | |
|
JUMONJI 14 | 827788 | |
| ath | B160 | |
|
protein B160 | 827895 | |
| ath | EMB2770 | |
|
pre-mRNA splicing factor-like protein | 827925 | |
| ath | AT4G00990 | |
|
Transcription factor jumonji (jmjC) domain-containing protein | 827933 | |
| ath | LIF2 | |
|
RNA-binding (RRM/RBD/RNP motifs) family protein | 827998 | |
| ath | FDM2 | |
|
XH/XS domain-containing protein | 828016 | |
| ath | AT4G01180 | |
XH/XS domain-containing protein | 828058 | ||
| ath | MBD3 | |
|
methyl-CPG-binding domain 3 | 828069 | |
| ath | AT4G01780 | |
XH/XS domain-containing protein | 828078 | ||
| ath | SWN | |
|
SET domain-containing protein | 828165 | |
| ath | EBS | |
|
PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | 828303 | |
| ath | MOS1 | |
|
modifier of snc1 | 828570 | |
| ath | AT4G24970 | |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | 828599 | |
| ath | FKBP53 | |
|
FK506 BINDING PROTEIN 53 | 828637 | |
| ath | AT4G26630 | |
|
DEK domain-containing chromatin associated protein | 828770 | |
| ath | SDG16 | |
|
SET domain protein 16 | 828904 | |
| ath | ULT1 | |
|
Developmental regulator, ULTRAPETALA | 828934 | |
| ath | NFC5 | |
|
nucleosome/chromatin assembly factor group C5 | 829094 | |
| ath | VEL1 | |
|
vernalization5/VIN3-like protein | 829143 | |
| ath | AT4G32820 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 829418 | IEA |
| ath | DML3 | |
|
demeter-like protein 3 | 829552 | |
| ath | AT4G37210 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 829875 | |
| ath | AT4G38495 | |
|
chromatin-remodeling complex subunit | 830006 | |
| ath | SHL1 | |
|
PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | 830065 | |
| ath | ELF6 | |
|
Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein | 830303 | |
| ath | KTF1 | |
|
kow domain-containing transcription factor 1 | 830308 | |
| ath | DME | |
|
HhH-GPD base excision DNA repair family protein | 830335 | |
| ath | SUVH1 | |
|
SU(VAR)3-9 homolog 1 | 830376 | |
| ath | AT5G06550 | |
|
transferring glycosyl group transferase | 830543 | |
| ath | FHL | |
|
far-red-elongated hypocotyl1-like protein | 830832 | |
| ath | AT5G10010 | |
|
myosin-H heavy protein | 830863 | |
| ath | AT5G11470 | |
|
bromo-adjacent homology (BAH) domain-containing protein | 831018 | |
| ath | EMF1 | |
|
embryonic flower 1 (EMF1) | 831025 | |
| ath | SUVH4 | |
|
histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein | 831244 | |
| ath | DRM2 | |
|
domains rearranged methyltransferase 2 | 831315 | |
| ath | DRM1 | |
|
domains rearranged methylase 1 | 831390 | |
| ath | EMB2773 | |
|
PHD finger family protein | 831407 | |
| ath | AT5G16680 | |
|
RING/FYVE/PHD zinc finger superfamily protein | 831529 | |
| ath | TFL2 | |
|
uncharacterized protein | 831635 | IMP |
| ath | ATMS1 | |
|
Cobalamin-independent synthase family protein | 831660 | |
| ath | CPL2 | |
|
carboxyl-terminal domain (ctd) phosphatase-like 2 | 831743 | |
| ath | EIN2 | |
|
NRAMP metal ion transporter family protein | 831889 | |
| ath | HTA12 | |
|
histone H2A 12 | 831891 | |
| ath | AT5G02520 | |
|
dentin sialophosphoprotein-like protein | 831892 | |
| ath | DCL4 | |
|
dicer-like 4 | 832154 | |
| ath | CHR42 | |
|
chromatin remodeling 42 | 832164 | |
| ath | RFC1 | |
|
replication factor C1 | 832261 | |
| ath | DNMT2 | |
|
DNA methyltransferase-2 | 832623 | |
| ath | AT5G27650 | |
|
Tudor/PWWP/MBT superfamily protein | 832827 | |
| ath | HTA7 | |
|
histone H2A 7 | 832829 | |
| ath | MBD02 | |
|
methyl-CPG-binding domain protein 02 | 833487 | |
| ath | AT5G35910 | |
|
Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein | 833577 | |
| ath | SEF | |
|
HIT-type Zinc finger family protein | 833676 | |
| ath | VIM3 | |
|
Zinc finger (C3HC4-type RING finger) family protein | 833951 | |
| ath | AT5G40340 | |
|
Tudor/PWWP/MBT superfamily protein | 834032 | |
| ath | AT5G40530 | |
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 834051 | |
| ath | SUVR2 | |
|
SET-domain containing protein lysine methyltransferase family protein | 834422 | |
| ath | RING1A | |
|
RING 1A | 834451 | |
| ath | AT5G46910 | |
|
Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | 834736 | |
| ath | MET1 | |
|
methyltransferase 1 | 834975 | |
| ath | AT5G50780 | |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | 835150 | |
| ath | EMF2 | |
|
VEFS-Box of polycomb protein | 835198 | |
| ath | SDG29 | |
|
SET domain group 29 | 835424 | |
| ath | TOP1ALPHA | |
|
DNA topoisomerase I alpha | 835623 | |
| ath | EDM2 | |
|
ENHANCED DOWNY MILDEW 2 | 835632 | |
| ath | HAG2 | |
|
histone acetyltransferase of the GNAT family 2 | 835775 | |
| ath | VIN3 | |
Fibronectin type III domain-containing protein | 835844 | ||
| ath | MSI1 | |
|
Transducin/WD40 repeat-like superfamily protein | 835935 | |
| ath | AT5G59390 | |
XH/XS domain-containing protein | 836058 | ||
| ath | HTA6 | |
|
histone H2A 6 | 836109 | |
| ath | HDA05 | |
|
histone deacetylase 5 | 836227 | |
| ath | HDA18 | |
|
histone deacetylase of the RPD3/HDA1 superfamily 18 | 836228 | |
| ath | AT5G63080 | |
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | 836428 | |
| ath | AT5G63550 | |
|
DEK domain-containing chromatin associated protein | 836474 | |
| ath | CHR24 | |
|
chromatin remodeling 24 | 836516 | |
| ath | FAS2 | |
|
Transducin/WD40 repeat-like superfamily protein | 836584 | |
| ath | CHR1 | |
|
chromatin remodeling 1 | 836808 | |
| ath | HOS15 | |
|
WD-40 repeat family protein | 836867 | |
| ath | CKA1 | |
|
casein kinase alpha 1 | 836873 | IDA,IEP |
| ath | TRB2 | |
|
Homeodomain-like/winged-helix DNA-binding family protein | 836894 | |
| ath | chr31 | |
|
chromatin remodeling 31 | 837051 | |
| ath | ATX2 | |
|
trithorax-like protein 2 | 837093 | |
| ath | AT1G05970 | |
|
RNA-binding (RRM/RBD/RNP motifs) family protein | 837107 | IMP |
| ath | MOM | |
|
ATP-dependent helicase family protein | 837322 | |
| ath | PKDM7D | |
|
Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | 837384 | |
| ath | AT1G09060 | |
|
JmjC domain protein JMJ24 | 837427 | |
| ath | AT1G09320 | |
|
agenet domain-containing protein | 837453 | |
| ath | FDM4 | |
|
XH/XS domain-containing protein | 837939 | |
| ath | SHH1 | |
|
SAWADEE HOMEODOMAIN protein | 838088 | |
| ath | FDM1 | |
|
XH/XS domain-containing protein | 838161 | |
| ath | ARP4 | |
|
actin-related protein 4 | 838425 | TAS |
| ath | NRP2 | |
|
NAP1-related protein 2 | 838462 | |
| ath | DMS11 | |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | 838492 | |
| ath | ESC | |
|
Putative AT-hook DNA-binding family protein | 838683 | IMP |
| ath | AT1G21610 | |
|
wound-responsive family protein | 838762 | |
| ath | SWI3C | |
|
SWITCH/sucrose nonfermenting 3C | 838774 | |
| ath | LEC1 | |
|
Histone superfamily protein | 838800 | |
| ath | HTR12 | |
|
Histone superfamily protein | 839104 | |
| ath | RING1B | |
|
RING 1B | 839413 | |
| ath | MEA | |
|
SET domain-containing protein | 839422 | |
| ath | AT1G02740 | |
|
MRG family protein | 839455 | |
| ath | CRY2 | |
|
cryptochrome 2 | 839529 | IMP |
| ath | AT1G28060 | |
|
Pre-mRNA-splicing factor 3 | 839699 | |
| ath | AT1G28760 | |
|
guanosine-3',5'-bis (diphosphate) 3'-pyrophosphohydrolase, putative (DUF2215) | 839772 | IGI |
| ath | SUF4 | |
|
zinc finger (C2H2 type) family protein | 839984 | |
| ath | AT1G49590 | |
|
C2H2 and C2HC zinc fingers superfamily protein | 841383 | |
| ath | TRB1 | |
|
telomere repeat binding factor 1 | 841418 | |
| ath | AT1G50410 | |
|
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein | 841463 | |
| ath | AT1G54230 | |
|
Winged helix-turn-helix transcription repressor DNA-binding protein | 841864 | |
| ath | AT1G54240 | |
|
winged-helix DNA-binding transcription factor family protein | 841865 | |
| ath | AT1G54260 | |
|
winged-helix DNA-binding transcription factor family protein | 841867 | |
| ath | AT1G54440 | |
|
Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein | 841886 | |
| ath | XRN4 | |
|
exoribonuclease 4 | 841891 | |
| ath | AT1G54840 | |
|
HSP20-like chaperones superfamily protein | 841923 | |
| ath | AT1G56460 | |
|
HIT zinc finger and PAPA-1-like domain-containing protein | 842099 | |
| ath | VIM1 | |
|
Zinc finger (C3HC4-type RING finger) family protein | 842157 | IPI |
| ath | emb1220 | |
|
pre-mRNA processing ribonucleoprotein binding region-containing protein | 842312 | |
| ath | AT1G62310 | |
|
transcription factor jumonji (jmjC) domain-containing protein | 842529 | |
| ath | AT1G63490 | |
|
transcription factor jumonji (jmjC) domain-containing protein | 842655 | |
| ath | FAS1 | |
|
chromatin assembly factor-1 (FASCIATA1) (FAS1) | 842858 | IDA |
| ath | VIM2 | |
|
Zinc finger (C3HC4-type RING finger) family protein | 842919 | |
| ath | CMT3 | |
|
chromomethylase 3 | 843313 | |
| ath | AT1G71730 | |
|
uncharacterized protein | 843503 | |
| ath | SUVH3 | |
|
histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein | 843641 | |
| ath | GIP2 | |
|
mitotic-spindle organizing 1B-like protein (DUF3743) | 843714 | |
| ath | NRP1 | |
|
NAP1-related protein 1 | 843797 | |
| ath | EFS | |
|
histone-lysine N-methyltransferase | 844066 | |
| ath | EMB1135 | |
|
RING/FYVE/PHD zinc finger superfamily protein | 844273 | |
| ath | FDM5 | |
|
XH/XS domain-containing protein | 844418 | |
| ath | TAS3 | |
|
3768766 | ||
| ath | TASIR-ARF | |
3771528 | |||
| ath | FHY1 | |
|
far-red elongated hypocotyl 1 | 5007942 | |
| ath | EMB1674 | |
|
EMBRYO DEFECTIVE protein | 28717376 |
